Challenge: Filter a Compound Library
Tarea
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Your task is to implement a function that filters a list of SMILES strings, returning only those that pass Lipinski's Rule of Five. Use RDKit to calculate molecular properties.
- Define a function
filter_druglike_smiles(smiles_list)that takes a list of SMILES strings. - For each valid molecule, check the following criteria:
- Molecular weight is less than or equal to 500 daltons.
- LogP (octanol-water partition coefficient) is less than or equal to 5.
- No more than 5 hydrogen bond donors.
- No more than 10 hydrogen bond acceptors.
- Ignore any SMILES strings that cannot be parsed by RDKit.
- Return a list of SMILES strings that pass all the rules.
Solución
¿Todo estuvo claro?
¡Gracias por tus comentarios!
Sección 3. Capítulo 2
single
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Challenge: Filter a Compound Library
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Tarea
Swipe to start coding
Your task is to implement a function that filters a list of SMILES strings, returning only those that pass Lipinski's Rule of Five. Use RDKit to calculate molecular properties.
- Define a function
filter_druglike_smiles(smiles_list)that takes a list of SMILES strings. - For each valid molecule, check the following criteria:
- Molecular weight is less than or equal to 500 daltons.
- LogP (octanol-water partition coefficient) is less than or equal to 5.
- No more than 5 hydrogen bond donors.
- No more than 10 hydrogen bond acceptors.
- Ignore any SMILES strings that cannot be parsed by RDKit.
- Return a list of SMILES strings that pass all the rules.
Solución
¿Todo estuvo claro?
¡Gracias por tus comentarios!
Sección 3. Capítulo 2
single