Notice: This page requires JavaScript to function properly.
Please enable JavaScript in your browser settings or update your browser.
Aprenda Challenge: Filter a Compound Library | Virtual Screening and Compound Ranking
Python for Chemoinformatics

bookChallenge: Filter a Compound Library

Tarefa

Swipe to start coding

Your task is to implement a function that filters a list of SMILES strings, returning only those that pass Lipinski's Rule of Five. Use RDKit to calculate molecular properties.

  • Define a function filter_druglike_smiles(smiles_list) that takes a list of SMILES strings.
  • For each valid molecule, check the following criteria:
    • Molecular weight is less than or equal to 500 daltons.
    • LogP (octanol-water partition coefficient) is less than or equal to 5.
    • No more than 5 hydrogen bond donors.
    • No more than 10 hydrogen bond acceptors.
  • Ignore any SMILES strings that cannot be parsed by RDKit.
  • Return a list of SMILES strings that pass all the rules.

Solução

Tudo estava claro?

Como podemos melhorá-lo?

Obrigado pelo seu feedback!

Seção 3. Capítulo 2
single

single

Pergunte à IA

expand

Pergunte à IA

ChatGPT

Pergunte o que quiser ou experimente uma das perguntas sugeridas para iniciar nosso bate-papo

close

bookChallenge: Filter a Compound Library

Deslize para mostrar o menu

Tarefa

Swipe to start coding

Your task is to implement a function that filters a list of SMILES strings, returning only those that pass Lipinski's Rule of Five. Use RDKit to calculate molecular properties.

  • Define a function filter_druglike_smiles(smiles_list) that takes a list of SMILES strings.
  • For each valid molecule, check the following criteria:
    • Molecular weight is less than or equal to 500 daltons.
    • LogP (octanol-water partition coefficient) is less than or equal to 5.
    • No more than 5 hydrogen bond donors.
    • No more than 10 hydrogen bond acceptors.
  • Ignore any SMILES strings that cannot be parsed by RDKit.
  • Return a list of SMILES strings that pass all the rules.

Solução

Switch to desktopMude para o desktop para praticar no mundo realContinue de onde você está usando uma das opções abaixo
Tudo estava claro?

Como podemos melhorá-lo?

Obrigado pelo seu feedback!

Seção 3. Capítulo 2
single

single

some-alt