Challenge: Differential Expression (Simplified)
Tarefa
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Write a Python function that identifies genes with a fold change above a specified threshold between two conditions.
- Compare each gene's normalized count in
treatment_countsto its count incontrol_counts. - Calculate the fold change as the ratio of treatment to control for each gene.
- If the control count is zero, treat division by zero by comparing treatment count directly to the threshold.
- Return a list of gene names where the fold change is greater than the specified threshold.
Solução
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Seção 3. Capítulo 4
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Challenge: Differential Expression (Simplified)
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Tarefa
Swipe to start coding
Write a Python function that identifies genes with a fold change above a specified threshold between two conditions.
- Compare each gene's normalized count in
treatment_countsto its count incontrol_counts. - Calculate the fold change as the ratio of treatment to control for each gene.
- If the control count is zero, treat division by zero by comparing treatment count directly to the threshold.
- Return a list of gene names where the fold change is greater than the specified threshold.
Solução
Tudo estava claro?
Obrigado pelo seu feedback!
Seção 3. Capítulo 4
single